Track data not being displayed since latest update

[doomedramen]

as of two/three commits ago, the mRNA tracks are no longer being displayed. I have rolled back to a much earlier version of dalliance to get them to display.

I will roll forward incrementally to find out the point at which the issue started and update the ticket.

https://geefu.oadb.tsl.ac.uk/experiments/32

[dasmoth]

Were you able to narrow it down to a specific revision?

I have a few ideas about what might be going on -- mostly relating to the use of DAS/1.6-style PART/PARENT composite features, which aren't used in any of my routine test examples -- and will have a proper look tonight.

[doomedramen]

I am now unsure as to the cause of the issue.

https://geefu.oadb.tsl.ac.uk/experiments/32 is now not displaying the gene (but is displaying mRNA again) (no changes have been made)(same with all versions of dalliance).

I am going to run a few more tests to try and find the root cause.

The reason that I am so unsure of the cause is that the data that dalliance is being provided with for the gene track is valid and correct: https://geefu.oadb.tsl.ac.uk/features/dalliance/32/Cf746836_TGAC_s1v1_scaffold_5/gene.xml

Will update asap.

[doomedramen]

this commit broke the displaying or our mRNA tracks https://github.com/dasmoth/dalliance/commit/6f1c8dee1b78dce35673102f89ea69bc2ead64e1

[doomedramen]

We have fixed the issue with our gene data not displaying (unresolved children issue). The issue that https://github.com/dasmoth/dalliance/commit/6f1c8dee1b78dce35673102f89ea69bc2ead64e1 breaks the display or our mRNA tracks still exists. Ill find out the exact cause and update.

[dasmoth]

Should be fixed on 0.11.x and master branches. But my test environment isn't exactly the same as what you're doing, so please test and close this issue if you're happy.

[doomedramen]

This has fixed the issue, thanks Thomas.