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dasmoth / dalliance

Interactive web-based genome browser.
http://www.biodalliance.org/
BSD 2-Clause "Simplified" License
226 stars 68 forks source link

Request: show translation of genes #49

Closed bartcharbon closed 10 years ago

bartcharbon commented 10 years ago

Feature request: It would be helpful to have a way to show the translation of a gene in the browser, for example when zoomed in to a gene far enough.

mdrasmus commented 10 years ago

Is there some work on this already? If not, we are interested in starting a branch soon to implement this.

dasmoth commented 10 years ago

Haven't done anything yet, contributions very welcome.

Take a look at how glyphs of type __SEQUENCE get rendered (especially in "mismatch" mode) to see how renderers can get hold of underlying genomic sequence.

mdrasmus commented 10 years ago

Take a look at how glyphs of type __SEQUENCE get rendered (especially in "mismatch" mode) to see how renderers can get hold of underlying genomic sequence.

Great tip! Thanks.

dasmoth commented 10 years ago

Now implemented thanks to @ymen.