Closed dasmoth closed 10 years ago
Hi Thomas,
My colleagues and I have also encountered this need in our work, and we modified the __SEQUENCE renderer slightly to color reads at ref bases from + and - strands differently, and the mismatch will be in the colors corresponding to the base (the mismatch mode is more relevant to us, but I believe that might be the case to most people?).
The basic premise was to reproduce what IGV can do (sans the arrow heads). This is what IGV does, pic taken from http://trinityrnaseq.sourceforge.net/analysis/read_alignment_visualization_QC.html
If you have not already worked on this already, I would be most happy to share this with you with a PR after I check in with my colleagues and clean up a few things (before the end of the week).
Best, Yifei
That would be great.
@dasmoth Sorry for the delay. Had to work on a couple of things, but definitely working on this. Will update soon!
Many thanks to @ymen for implementing this.
Probably needs to be an extension to the __SEQUENCE renderer.