Open TobyBaril opened 1 month ago
Thanks @TobyBaril for reporting this issue. Unfortunately, I'm unable to reproduce this error. Could you please provide me with a couple of extra information such as:
snakemake --version
)Did you change any files after cloning this repo?
Hi, I have followed the instructions to download and install everything and checked this has worked correctly.
I have had a couple of issues so far and cannot run the pipeline:
Firstly, there was a relative path in
Snakemake
that seemed to cause some problems:I fixed this by changing
../templates/HiC-Pro_config.template
to an absolute full path.Next, I cannot run the pipeline due to issues with deprecated commands in NumPy and issues with pip, as far as I can understand from the error output:
Do you have any ideas how to resolve this?
Thanks!