search

data-fun / 3d-genome-builder

3DGB is a workflow to build 3D models of genomes from HiC data
BSD 3-Clause "New" or "Revised" License
13 stars 3 forks source link

Additional parameters for HiC Pro #9

Open gaellelelandais opened 9 months ago

gaellelelandais commented 9 months ago

Dear @pierrepo,

I would like to be able to specify an additional parameter for HiC Pro within the 3DGB configuration file. This parameter is called [LIGATION SITE]. As described here, the expected information is a short sequence, such as "AAGCTAGCTT".

Do you think it would be possible to create an updated version of the 3DGB workflow to include this functionality? Let me know if you need more information. And thanks for your help.

Gaëlle

pierrepo commented 9 months ago

Sure. That looks possibles. I could work on it in January.

gaellelelandais commented 4 months ago

Dear @pierrepo ,

I know you have been very busy the last few months. But several users are asking for this update. Do you think you will find the time to fix it before the summer?

Thank you very much,

Gaëlle

gaellelelandais commented 1 month ago

Dear @pierrepo ,

Sorry to insist on this, but do you think a patch can be added to 3DGB soon? Thank you for your reply.

Gaëlle