VivosBenchling - Githubissues

data-yaml / vivos

Versioned Interoperability to Velocitize Open Science

Apache License 2.0

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VivosBenchling #4

Closed drernie closed 9 months ago

drernie commented 9 months ago

Port https://github.com/quiltdata/benchling-packager to CDK

Benching calls (and quilt3): https://github.com/quiltdata/benchling-packager/blob/main/lambdas/main.py
CFT creation: https://github.com/quiltdata/benchling-packager/blob/main/make.py

drernie commented 9 months ago

On Launch

prefix: benchling
suffix: entry.json
read dynamic pipeline
ONLY run if status = New
update status=Launched
Add Tower URL

https://tower.nf/orgs/{{TOWER_ORG}}/workspaces/{{TOWER_WORKSPACE}/watch/{{workflowId}}

PARAMS

benchling.entryId
benchling.workspaceId
benchling.authorId?

On Completion

suffix: nf-quilt/params.json
update Status=Complete
read mulitqc_report.html (infer? as suffix?)
write Quilt Output URL