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Gossamer bioinformatics suite
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index-both.header:No such file or directory #35

Closed ghost closed 2 years ago

ghost commented 2 years ago

I am having an issue with xenome classify step. I am getting the following error message. error performing classify: '/path/to/folder/index-both.header': No such file or directory I check the folder. There was no such file. So, I assume index-both.header file was not generated during the indexing step. I tried to index the genome again, but it does not generate the required file. Any suggestion on troubleshooting !!

ghost commented 2 years ago

Update: I was able to generate the index and run classify step. Here are some changes I made:

  1. use a single thread i.e -T =1 ( wait time was frustrating)
  2. use unzipped file i.e. (not ideal)
zyyy97 commented 1 year ago

Hi, I had the same problem