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databio / bbconf

Configuration package for bedbase project
https://pypi.org/project/bbconf/
BSD 2-Clause "Simplified" License
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try making path in paths:pipelines_output relative to the config file itself #7

Closed stolarczyk closed 7 months ago

stolarczyk commented 4 years ago

@joseverdezoto, the issue with bedhost serve -c bedbase_demo_PEPs/bedbase_configuration.yaml command stems from bbconf not making the config-sourced path in paths:pipelines_output relative to the config file itself. I think you assumed that it does. So the solution is to change the config you use -- prepend $HOME/bedbase_tutorial to the path in the config.

Originally posted by @stolarczyk in https://github.com/databio/bedhost/issues/14#issuecomment-606014199

xuebingjie1990 commented 3 years ago

@stolarczyk I think this should be resolved?

stolarczyk commented 3 years ago

I'm not sure. Let's leave this open. I'll revisit bbconf later this week since some of the methods will need to be rewritten due to the switch to Postgres.

khoroshevskyi commented 7 months ago

This is an old issue as we are using new bbconf and bedboss