Open gregmedlock opened 5 years ago
turns out for the ingestion of data, we may not need to call scipy.sparse ourselves (may actually want to use or extend the existing scanpy/anndata for consistency):
the anndata object specs is worth a skim through, to keep this in mind.
read_mtx
(PS: @nsheff they implement scipy.sparse and choose the csr variant after all)
anndata implements a transpose()
that also interchanges the observations/variables
We've started implementation of a Multimeasure class, which holds multiple AnnData objects (https://github.com/theislab/anndata). These AnnData objects are the primary object used by scanpy (https://github.com/theislab/scanpy) for analysis and visualization of single-cell RNA seq data.