databio / bedbase

Aggregate, analyze, and serve genomic regions.
http://bedbase.org/
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automate BEDbase data process pipeline (heavy processing) #30

Closed xuebingjie1990 closed 7 months ago

xuebingjie1990 commented 1 year ago

The BEDboss pipeline takes BED files and adds them to BEDbase. This process needs to be easy to use and automated.

Things to consider:

nsheff commented 1 year ago

Anything where we need the actual files should be considered heavy processing, and fall under this step.

khoroshevskyi commented 7 months ago

Everything was solved in this issue. We consider pephub as light processing and bedboss insert as heavy processing