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databio / bedbase

Aggregate, analyze, and serve genomic regions.
http://bedbase.org/
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Add LOLA dataset to bedbase #51

Closed khoroshevskyi closed 2 months ago

khoroshevskyi commented 7 months ago

@nsheff

How should the bedset look like of the LOLA bedset? There are several folders within each genome folder. Should we create a different bedset for each folder?

.
├── hg19
│   ├── cistrome_cistrome
│   ├── cistrome_epigenome
│   ├── codex
│   ├── encode_segmentation
│   ├── encode_tfbs
│   ├── sheffield_dnase
│   └── ucsc_features
├── hg38
│   ├── cistrome_cistrome
│   ├── cistrome_epigenome
│   ├── codex
│   ├── encode_segmentation
│   ├── encode_tfbs
│   ├── sheffield_dnase
│   └── ucsc_features
├── mm10
│   ├── codex
│   ├── encodeTFBSmm10
│   └── ucsc_features
├── mm9
│   ├── codex
│   ├── encodeTFBSmm9
│   └── ucsc_features
├── rn6
│   ├── codex
│   ├── encodeTFBSrn6
│   └── ucsc_features
└── test
    ├── cistrome_cistrome
    └── encode_tfbs
nsheff commented 7 months ago

I think I would make a separate bedset for each collection. So, hg38_codex would be one. Does that make sense?

khoroshevskyi commented 7 months ago

Yes, it makes sense thank you!

khoroshevskyi commented 2 months ago

Moved to the new Issue