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databio / bedboss

Python pipeline for processing BED files for BEDbase
https://docs.bedbase.org
BSD 2-Clause "Simplified" License
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Add Bed Classifier #35

Closed donaldcampbelljr closed 7 months ago

donaldcampbelljr commented 7 months ago

Addresses #34

donaldcampbelljr commented 7 months ago

Currently, this is classifying narrowPeak or broadPeak if it has the proper number of columns AND narrowPeak or broadPeak is in the sample name. It is not relying on column names as these are sometimes not provided.

Other classifications are of the form: "bed3+6", "bed4+8" etc.

Finally, if classification cannot be determined: "unknown_bedtype"