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databio / bedboss

Python pipeline for processing BED files for BEDbase
https://docs.bedbase.org
BSD 2-Clause "Simplified" License
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Where should metadata live? #58

Open khoroshevskyi opened 5 months ago

khoroshevskyi commented 5 months ago

As for this moment we have 2 types of metadata: 1) user provided metadata ( stored in pephub) 2) metadata generated by bedboss (stored in the db)

There are some important information in user provided metadata:

WHERE does this information should live? This is important information and almost always is provided by user.

khoroshevskyi commented 2 weeks ago

After discussion, we can standardize metadata by using bedmess, and add this metadata to sql database