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databio / bedhost

API and UI for BEDbase
http://api.bedbase.org
BSD 2-Clause "Simplified" License
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config files should be a git repo #23

Closed nsheff closed 4 years ago

nsheff commented 4 years ago

Not: 

wget http://big.databio.org/example_data/bedbase_demo/bedbase_demo_files_justBED/Configuration_files.tar.gz

tiny code and config files should be in git. big.databio.org is for binary files too big for git.

nsheff commented 4 years ago

these can therefore either be:

  1. their own repository; or,
  2. in a subfolder in this repository; or,
  3. in a subfolder in some other repository

I'm not sure what's the best here; these really belong to the tutorial, which is independent of any of the repositories...

probably makes most sense in the bedhost repo for now, but could move to 'bedbase' or something eventually.

joseverdezoto commented 4 years ago

I think it'd be best to have them within a directory of the bedhost repository. Maybe something like demo_configFiles or example_files. But I'd need a way to access them at the beginning of the tutorial. Now the bedhost repo is cloned at the last part of the tutorial.

nsheff commented 4 years ago

ok, agreed. try not to mix camelCase and underscores if you can avoid it in your names. pick one.

joseverdezoto commented 4 years ago

I am now thinking those config files should be in their own repository. Otherwise I'd have to clone bedhost at the very beggining, which doesn't fit the workflow of the tutorial.

nsheff commented 4 years ago

OTOH, maybe worth just cloning everything into subfolders up front... ?

joseverdezoto commented 4 years ago

Do you mean cloning bedstat, bedbuncher and bedhost in the first step of the tutorial? If so, that could work too.