Closed nsheff closed 4 years ago
Right now it appears there's only 1 config option for where files are stored on disk. It's a bit confusing to me that the bedbuncher pipeline is sticking its results into the same output folder as bedstat.
demo config looks like:
path: pipelines_output: $BEDBASEtutorial/bedstat/bedstat_output database: host: localhost bed_index: bed_index bedset_index: bedset_index server: host: 0.0.0.0 port: 8000
Instead, I propose:
path: bedstat_output: $BEDBASEtutorial/bedstat_output bedbuncher_output: $BEDBASEtutorial/bedbuncher
This maintains the modularity of the bed files vs bedsets.
Right now it appears there's only 1 config option for where files are stored on disk. It's a bit confusing to me that the bedbuncher pipeline is sticking its results into the same output folder as bedstat.
demo config looks like:
Instead, I propose:
This maintains the modularity of the bed files vs bedsets.