databio / bedms

tool for standardization of genomics/epigenomics metadata

BSD 2-Clause "Simplified" License

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Deploy metadata standardizer interface on PEPhub #13

Open nsheff opened 3 months ago

nsheff commented 3 months ago

To do this we will need:

[x] 1. finish small model (@saanikat)
[x] 2. finish bedmess interface in package (@saanikat)
[ ] 3. add endpoint (@sanghoonio -- pephub package, which would use bedmess package)
[ ] 4. hook up UI (@sanghoonio)

nsheff commented 3 months ago

It would be great if I could demonstrate an initial working deployment of this by a meeting I have on August 19th.

nleroy917 commented 3 months ago

Assuming the model is sufficiently small to be deployed on a server, bedmess just needs to be updated to actually return results instead of logging it out (https://github.com/databio/bedmess/issues/10).

There is also this: https://github.com/databio/bedmess/issues/8

Both really easy fixes, though

saanikat commented 3 months ago

Small models have been uploaded to HuggingFace.

8 and #10 solved with the new PR.