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databio
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bulker
Manager for multi-container computing environments
https://bulker.io
BSD 2-Clause "Simplified" License
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bulker list shows error if no bulker crates are loaded
#95
donaldcampbelljr
opened
3 months ago
0
'str' object does not support item assignment
#94
rcorces
opened
6 months ago
1
Using apptainer instead of singularity
#93
rcorces
closed
6 months ago
9
Pipeline commands hanging in bulker environment
#92
rcorces
opened
9 months ago
0
Release 0.8.0
#91
nsheff
opened
9 months ago
0
Drop attmap in support of yacman v1
#90
nsheff
closed
9 months ago
0
Auto-refresh imports
#89
nsheff
opened
1 year ago
0
show which crates are imported
#88
nsheff
opened
1 year ago
0
bioconductor_full -> bioconductor_docker
#87
lwaldron
closed
9 months ago
0
Wrong flag in tutorial for file manifest
#86
jemma-nelson
opened
2 years ago
0
Release 0.7.3
#85
nsheff
closed
2 years ago
0
Tips for running bulker for multiple users?
#84
pvanheus
closed
2 years ago
9
No engine config chunk provided - Singularity error
#83
rcorces
closed
3 years ago
12
Add a more comprehensive reference for writing manifests
#82
ndusek
closed
3 years ago
3
Add volumes from CLI
#81
nsheff
opened
3 years ago
0
line 3: docker: command not found
#80
ccrobertson
closed
3 years ago
4
map manifest concepts to container labels for zero-config defaults
#79
mr-c
opened
3 years ago
1
Release 0.7.2
#78
nsheff
closed
3 years ago
0
0.7.1
#77
nsheff
closed
3 years ago
0
Version 0.7.0 release
#76
nsheff
closed
3 years ago
0
Add ability to add env var from command line
#75
nsheff
closed
3 years ago
1
Allowing both piping and quotes in bulker run
#74
nsheff
opened
3 years ago
1
Auto-detect -t?
#73
nsheff
closed
3 years ago
1
Might it be possible to automatically set -t ?
#72
nsheff
opened
3 years ago
0
"/bin/bash: clang: command not found" on OSX 11
#71
lwaldron
opened
3 years ago
4
Sharing a bulker config file across users
#70
rcorces
closed
3 years ago
7
Issues when $SHELL isnt bash or zsh
#69
rcorces
closed
3 years ago
3
add bulker remove
#68
nsheff
closed
3 years ago
0
How to manipulate volumes in bulker config
#67
rcorces
closed
3 years ago
6
Don't use $HOME, hard-code it
#66
nsheff
opened
3 years ago
3
display commands in alphabetical order
#65
nsheff
closed
3 years ago
0
Issues with bulker when submitting jobs on SGE
#64
gbloeb
closed
3 years ago
10
Bulker + CWL synergy and enhancement
#63
nsheff
opened
4 years ago
0
drop the PEP compatible icon
#62
mr-c
closed
4 years ago
0
Recursive reloading
#61
nsheff
closed
3 years ago
2
pull access denied for databio/bioconductor
#60
stolarczyk
closed
3 years ago
3
KeyError: 'singularity_fullpath'
#59
stolarczyk
closed
3 years ago
1
verison 0.6.0
#58
nsheff
closed
4 years ago
0
bulker activate fails with default config
#57
nsheff
closed
4 years ago
0
/etc/sudoers.d is not shared from OS X and is not known to Docker.
#56
lwaldron
opened
4 years ago
2
trouble running on a cluster with singularity
#55
lwaldron
closed
4 years ago
10
associating many commands with a container
#54
lwaldron
closed
4 years ago
2
Loading/activating PEPATAC crate_Errors
#53
Kmrouj
opened
4 years ago
12
container-specific exclusions
#52
nsheff
closed
4 years ago
0
inspect requires crate name
#51
stolarczyk
closed
4 years ago
22
bulker overwrites PS1
#50
stolarczyk
opened
4 years ago
6
bulker inspect fails on tagged crates
#49
nsheff
opened
4 years ago
0
Version 0.5.0
#48
nsheff
closed
4 years ago
0
NameError: global name 'FileNotFoundError' is not defined
#47
lwaldron
closed
4 years ago
12
Bulker 'shell_prompt' adds slashes when its loaded
#46
nsheff
closed
3 years ago
1
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