images are not pulled; rivanna/singularity

databio / bulker

Manager for multi-container computing environments

https://bulker.io

BSD 2-Clause "Simplified" License

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images are not pulled; rivanna/singularity #33

Closed stolarczyk closed 4 years ago

stolarczyk commented 5 years ago

I get the following error on Rivanna:

[mjs5kd@udc-ba36-36 bulker](dev): bwa
ERROR  : Image path /home/mjs5kd/simages/quay.io/biocontainers/bwa:0.7.17--pl5.22.0_2 doesn't exist: No such file or directory
ABORT  : Retval = 255

It worked on my laptop

I'm using the dev version of bulker and just initalized the configuration.

It looks like it does not proceed to image pulling in this case

stolarczyk commented 5 years ago

running bulker load with -b and -r flags helped. But still, it's something to investigate

nsheff commented 4 years ago

yes -- singularity does not pull by default, you have to specify -b to get it to work.

it is possible to make it happen automatically by changing the exec template.