Implement a basic fragment file tokenizer

databio / gtars

Performance-critical tools to manipulate, analyze, and process genomic interval data. Primarily focused on building tools for geniml - our genomic machine learning python package.

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Implement a basic fragment file tokenizer #23

Closed nleroy917 closed 1 month ago

nleroy917 commented 1 month ago

This will take a fragemnts.tsv.gz file and convert it into a series of .gtok files on disk that can be used for training.

TODO:

[x] more tests
[x] python bindings