search

databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
51 stars 13 forks source link

About Run PEPATAC in a container #242

Open victorwang123 opened 1 year ago

victorwang123 commented 1 year ago

Hi, I followed the protocol in <Run PEPATAC in a container> exactly and executed the check and it showed: SUCCESS: PEPATAC can be run using docker! But when I run docker run --rm -it databio/pepatac pipelines/pepatac.py --help it shows: docker: Error response from daemon: OCI runtime create failed: container_linux.go:370: starting container process caused: exec: "pipelines/pepatac.py": stat pipelines/pepatac.py: no such file or directory: unknown. What should I do ? Thx