databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
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Skipping 1 packages not available: pepr #250

Closed TianJie327 closed 1 day ago

TianJie327 commented 1 year ago

I'm having the following problem installing the package, if you can help me I'd appreciate it!

devtools::install(file.path("PEPATACr/")) Skipping 1 packages not available: pepr ✔ checking for file ‘/gdata01/user/tianjie/lpp_file/pepatac/pepatac-master/PEPATACr/DESCRIPTION’ (405ms) ─ preparing ‘PEPATACr’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories Omitted ‘LazyData’ from DESCRIPTION ─ building ‘PEPATACr_0.0.1.0000.tar.gz’

Running /gdata01/apps/miniconda3/envs/pepatac/lib/R/bin/R CMD INSTALL \ /tmp/RtmpdFYEcr/PEPATACr_0.0.1.0000.tar.gz --install-tests

nsheff commented 1 day ago

At the time last year, there was an issue with CRAN, which had pulled the pepr package due to an error contacting the maintainer email address. This was solved with the pepr 0.5.0 release in November of 2023, so this is no longer a problem.