Open donaldcampbelljr opened 6 months ago
Recently attempted to run PEPATAC from a pep on pephub. However, the project-level pipeline, pepatac collator, calls: https://github.com/databio/pepatac/blob/924aefac73561103d69c6d43814fe9533a0cc12c/pipelines/pepatac_collator.py#L79-L81
This expects a config file with a .yaml file but for a PEP on PEPHub it must also be able to load a PEP from a registry path.
.yaml
This discussion has come up here: https://github.com/pepkit/peppy/issues/462
Recently attempted to run PEPATAC from a pep on pephub. However, the project-level pipeline, pepatac collator, calls: https://github.com/databio/pepatac/blob/924aefac73561103d69c6d43814fe9533a0cc12c/pipelines/pepatac_collator.py#L79-L81
This expects a config file with a
.yamlfile but for a PEP on PEPHub it must also be able to load a PEP from a registry path.This discussion has come up here: https://github.com/pepkit/peppy/issues/462