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databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
54 stars 15 forks source link

fastqc links do not work in report #268

Closed donaldcampbelljr closed 10 months ago

donaldcampbelljr commented 10 months ago

Path points to fastq folder but it should point to fastqc folder.

file:///home/drc/pepatac_tutorial/processed/results_pipeline/tutorial1/fastq/tutorial1_R1_trim_fastqc.html

file:///home/drc/pepatac_tutorial/processed/results_pipeline/tutorial1/fastqc/tutorial1_R1_trim_fastqc.html
donaldcampbelljr commented 10 months ago

I confirmed this fix works with tutorial samples after re-running the pipeline and generating the report.