Closed zhongzheng1999 closed 4 months ago
Hi, Thank you for posting your concerns.
The folder default_project_record_identifier
is produced upon running looper runp
. It can be safely ignored. This is a workaround with Looper when running project-level pipelines. I've opened an issue regarding it so that we can implement this functionality more gracefully in the future: https://github.com/pepkit/looper/issues/471
summary
is a project-level record identifier that is used for reporting project-level results. We are currently intentionally displaying summary
in the report table along with the samples, but we plan to only show sample-level records in the future: https://github.com/pepkit/pipestat/issues/150
Hello, I've encountered some puzzling issues while using PEPATAC and would appreciate any help or insights.
Issues Encountered during PEPATAC Pipeline Tutorial Step-by-Step Guide: https://pepatac.databio.org/en/latest/tutorial/
Despite successfully obtaining Peak Calling results, I've encountered a perplexing situation. After sequentially running
looper run
,looper runp
, andlooper report
, I noticed the emergence of a folder nameddefault_project_record_identifier
in theresult_pipeline
directory, containing only an emptystat.yaml
file. The appearance of this folder seems unexpected, and I'm unsure if anyone can provide an explanation or guidance.Additionally, upon running
looper report
, anindex.html
file was generated. However, I observed that within this HTML file, thesummary
is also displayed as a sample. This has left me somewhat perplexed, and I'm uncertain whether this is intended behavior or if I might have encountered a specific issue. I would appreciate any explanations or solutions regarding this phenomenon.If anyone has experience or insights into these issues, please feel free to share your thoughts. Thank you!