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databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
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collapsePeaks fails during project level execution of tutorial #278

Open DavideBrex opened 8 months ago

DavideBrex commented 8 months ago

It's me again, sorry to bother you so much. This time, I got an error during the tutorial project-level pipeline execution, in the R script PEPATAC_summarizer.R

Calculating hg38 consensus peak set from 2 samples...
Error in ..Internal(is.unsorted(x, FALSE, FALSE)) : 
  3 arguments passed to .Internal(is.unsorted) which requires 2
Calls: <Anonymous> -> collapsePeaks -> rbindlist -> lapply -> FUN
Execution halted
</pre>
Command completed. Elapsed time: 0:00:09. Running peak memory: 0.412GB.  
  PID: 2551625; Command: Rscript;       Return code: 1; Memory used: 0.412GB

PEPATAC_log.md

I tried to debug it but did not understand what was happening. Could you please help me to fix this? Thank you for your help! Best

Davide