databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
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problem opening file: -B in preseq with ./configure --enable-hts option #280

Open h20gg702 opened 2 months ago

h20gg702 commented 2 months ago

Dear developers, PEPATAC_log2.md PEPATAC_log1.md

Thanks for developing wonderful package. I got a problem when I try to do extended tutorial like below. When I installed preseq, I used ./configure --enable-hts option to read in bam input. Do you have any solution for this? `preseq c_curve -v -o /home1/yoshiaki/pepatac_tutorial/processed/results_pipeline/tutorial2/QC_hg38/tutorial2_preseq_out.txt -B /home1/yoshiaki/pepatac_tutorial/processed/results_pipeline/tutorial2/aligned_hg38/tutorial2_sort.bam (219566)

BED_INPUT
ERROR:  problem opening file: -B`

Thanks in advance.