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databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
54 stars 15 forks source link

is the pararead dependency required? #286

Closed mbassalbioinformatics closed 1 month ago

mbassalbioinformatics commented 1 month ago

Hi

im trying to install pepatac through conda and the pararead package keeps erroring out and wont install. can i skip it in the requirements install and still be able to use the pipeline or is this an essential component and will break the whole pipeline if not installed?

nsheff commented 1 month ago

It's essential. @khoroshevskyi will look into this today and try to get you a working installation of pararead.

mbassalbioinformatics commented 1 month ago

yep the pararead isssue is fixed. now gotta deal with the next package not installing, fst-pso... thanks though :)