databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
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Upgrade to newest looper, pipestat #287

Closed donaldcampbelljr closed 1 month ago

donaldcampbelljr commented 1 month ago

Changes include updates to work with: looper 2.0.0a2 pipestat 0.11.0 pypiper (piper) 0.14.3 peppy 0.40.7 eido 0.2.4 ubiquerg 0.8.1a1 yacman 0.9.3

Removed divvy as a requirement because it is now included with Looper.

Also added updated details for newer versions of packages: bedtools 2.31.1 bowtie2 2.5.4 samtools 1.21 fastqc 0.12.0