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databio
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peppro
A modular, containerized pipeline for PRO-seq data processing
http://peppro.databio.org/
BSD 2-Clause "Simplified" License
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Update requirements-conda.yml
#98
zx0223winner
opened
11 months ago
0
prealignment with mouse rDNA
#97
dahun73
closed
1 year ago
4
peppro with forward-stranded libraries
#96
vicasze
opened
1 year ago
0
passing custom config_file to pipeline using looper
#95
vicasze
opened
1 year ago
0
refgene_anno for ss11
#94
vicasze
opened
1 year ago
1
is conda environment name immutable
#93
microfuge
opened
2 years ago
0
Issue on retrieval of schema file
#92
Noam-St
closed
2 years ago
0
Recovery of mitochondrial DNA reads
#91
Noam-St
closed
1 year ago
3
Missing Pre-alignments with RefGenie in v0.10.0
#90
CriticalSci
opened
2 years ago
0
Dev
#89
jpsmith5
closed
2 years ago
0
Docker update
#88
teresho4
closed
2 years ago
8
Issues and fixes for a conda-based installation used to run peppro_test example.
#87
todddeluca
closed
2 years ago
1
pypiper installation fails using setuptools>=58
#86
todddeluca
closed
2 years ago
1
Unable to download the tutorial fastq files
#85
anaga2
closed
2 years ago
3
How to produce summary directory?
#84
NJU-Bio-Info
closed
2 years ago
1
The confirmation of protocol
#83
NJU-Bio-Info
opened
2 years ago
1
Some question about the yaml files in peppro usage
#82
NJU-Bio-Info
opened
2 years ago
2
some wrong with cutadapt
#81
NJU-Bio-Info
closed
2 years ago
2
Custom Adapters
#80
CriticalSci
closed
2 years ago
3
Install/run Notes
#79
gmnelson
closed
3 years ago
1
A short question, can I use this tool for total RNA sequencing (RNA without rRNA)?
#78
hjsbio
opened
4 years ago
2
pause index x axis label typo
#77
stolarczyk
closed
3 years ago
1
looper run errors
#76
Dale12138
closed
2 years ago
4
SyntaxError in test project
#75
stolarczyk
closed
4 years ago
6
Dev
#74
jpsmith5
closed
4 years ago
0
UnboundLocalError: local variable 'bt2_index' referenced before assignment
#73
stolarczyk
closed
4 years ago
1
invalid error message when assets not found
#72
stolarczyk
opened
4 years ago
0
python3 not found; using peppro with bulker
#71
stolarczyk
opened
4 years ago
16
Dev
#70
jpsmith5
closed
4 years ago
0
FRIF calculation issue
#69
wongwic
closed
4 years ago
8
Dev
#68
jpsmith5
closed
4 years ago
0
Index file location is wrong
#67
wongwic
closed
4 years ago
9
Dev
#66
jpsmith5
closed
4 years ago
0
cutadapt related ValueError
#65
jpsmith5
closed
4 years ago
4
Change rgc.get_asset() to rgc.seek()
#64
jpsmith5
closed
4 years ago
0
0.9.2
#63
nsheff
closed
4 years ago
0
Peppro cannot find bowtie2 index
#62
wongwic
closed
4 years ago
14
new PEP and piface formats, remote schema validation support
#61
stolarczyk
closed
4 years ago
2
update usage docs
#60
jpsmith5
closed
4 years ago
0
Please consider adding Python versions to requirements.txt
#59
eugeneke-bioinf
closed
4 years ago
4
syntax warning
#58
nsheff
closed
4 years ago
1
Problem with link text to fastqc reports
#57
nsheff
closed
4 years ago
2
Release 0.9.1
#56
nsheff
closed
4 years ago
2
pigz not found
#55
nsheff
closed
4 years ago
11
installing peppro R package
#54
nsheff
closed
4 years ago
12
bedtools not found
#53
nsheff
closed
4 years ago
5
Dev
#52
jpsmith5
closed
4 years ago
0
Hotfix/0.8.9
#51
jpsmith5
closed
4 years ago
0
Hotfix/0.8.8
#50
jpsmith5
closed
4 years ago
0
Hotfix/0.8.7
#49
jpsmith5
closed
4 years ago
0
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