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databio / projectInit

R project initialization
http://code.databio.org/projectInit
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RGenomeUtils loading #9

Closed nsheff closed 7 years ago

nsheff commented 7 years ago

Raised by @vreuter

projectInit attempts to devtools::load_all of the RGenomeUtils package (conditioned on availability of non-null value for "RGENOMEUTILS" option). It seems like this should instead be a package installation, either from github or locally (via assumption of existence of something like file.path(Sys.getenv("CODE"), "RGenomeUtils")). It feels like a question of extent of external use of project.init...if it's only really being used internally, load_all seems OK, but for broader use an installation feels more appropriate. I guess I see both sides...

nsheff commented 7 years ago

yeah let's just go ahead and take care of this all the way now.