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databio / pypiper

Python toolkit for building restartable pipelines
http://pypiper.databio.org
BSD 2-Clause "Simplified" License
46 stars 9 forks source link

docker commands should be smarter about process name in profile #159

Open nsheff opened 5 years ago

nsheff commented 5 years ago

when using docker, all processes in profile are named docker:

# Pipeline started at 07-03 16:37:42

2828    8daecd2bb5  1   0:00:00.230000   0.0166 docker  lock.bwa_index__build_complete.flag
3011    ca5ceb6a5c  2   0:00:00.340000   0.0176 docker  lock.bwa_index__build_complete.flag
3047    0aedc20fa3  3   0:00:00.260000   0.0171 docker  lock.bwa_index__build_complete.flag
3282    489c53c784  4   0:00:00.470000   0.0167 docker  lock.bowtie2_index__build_complete.flag
3476    a46786aed8  5   0:00:00.230000   0.0175 docker  lock.bowtie2_index__build_complete.flag
3509    d827ee50f9  6   0:00:00.350000   0.0176 docker  None
3552    d80273ea95  7   0:00:00.370000   0.0173 docker  None