Pipestat addition

[donaldcampbelljr]

This PR integrates pipestat into pypiper as a means of reporting results.

Wait for:

• [x] Release of pipestat 0.4.0

[donaldcampbelljr]

Related to: https://github.com/pepkit/pipestat/issues/21

[donaldcampbelljr]

This needs the latest dev branch from pipestat as well as yacman to run properly.

pip install git+https://github.com/databio/yacman.git@dev pip install git+https://github.com/pepkit/pipestat@dev#egg=pipestat

[donaldcampbelljr]

Some action items:

• [x] Remove report_object (simply use report_result)
• [x] Remove wrapping of key, value within report_result

[donaldcampbelljr]

OK, I added it back in and kept the original parameters but it will use pipestat.reportto actually report. I also added a deprecation warning.

[nsheff]

OK, I added it back in and kept the original parameters but it will use pipestat.reportto actually report. I also added a deprecation warning.

that's perfect

[donaldcampbelljr]

Markdown formatting was moved to pipestat, but the formatted will be returned to pypiper for logging purposes.

[donaldcampbelljr]

pipestat 0.4.0 now released and all tests are passing, merging.