Open vreuter opened 1 year ago
Pipeline.stages suggests a collection of names, rather than callables, Stage instances, or the like.
Pipeline.stages
Stage
https://github.com/databio/pypiper/blob/master/pypiper/pipeline.py#L175-L179
It seems to need to be a collection of pairs of name and callable, or name and Stage (or a mapping from name to callable or stage): https://github.com/databio/pypiper/blob/master/pypiper/pipeline.py#L115-L122
Pipeline.stages
suggests a collection of names, rather than callables,Stage
instances, or the like.https://github.com/databio/pypiper/blob/master/pypiper/pipeline.py#L175-L179