should we add a picture from the Tenaillon et al. paper demonstrating how to find SRA accessions?

[taylorreiter]

@jessicamizzi and I thought it would be nice to show a png from the Tenaillon et al. paper (where the data for the wrangling-genomics lessons was first sequenced) where the SRA accession or project number can be found. This would demonstrate one way to interact with data: read a paper, find accession number in paper, look paper up on the SRA or ENA. We were unsure of copyright infringement on the original paper though.

Thoughts?

[hoytpr]

The license suggests that more than 100 words, OR images, need permission.

[hoytpr]

So, the manuscript has specific restrictions on use, listed HERE. But it sounds like requesting to reuse an image in coursework is possible without a fee according to THIS RIGHTLINKS PAGE from the article itself. Although I'm certain I am NOT the person to request this permission, the choices for essentially free and instant approval are shown in this image:

[taylorreiter]

Thanks for hunting this down @hoytpr! Would training materials be the right selection?

I filled out the necessary boxes from the link above and confirmed that reuse would be free. Who would be the proper person to obtain the license? Would it be @ErinBecker, @fmichonneau, or @tracykteal? Or someone else?

[hoytpr]

I think any of those fantastic individuals would be good choices, they should decide. Training materials seemed logical to me also. Also "coursepack/classroom". Proper acknowledgment of the image is required also.

[ErinBecker]

Hi all - thank you @hoytpr and @taylorreiter for tracking down the permissions. I'm working on getting a license now and will update shortly.

[ErinBecker]

We now have the following license:

License Number	4545971053629
License date	Mar 11, 2019
Licensed Content Publisher	Springer Nature
Licensed Content Publication	Nature
Licensed Content Title	Tempo and mode of genome evolution in a 50,000-generation experiment
Licensed Content Author	Olivier Tenaillon, Jeffrey E. Barrick, Noah Ribeck, Daniel E. Deatherage, Jeffrey L. Blanchard et al.
Licensed Content Date	Aug 1, 2016
Licensed Content Volume	536
Licensed Content Issue	7615
Type of Use	Training Materials
Requestor type	non-commercial (non-profit)
Format	electronic
Portion	figures/tables/illustrations
Number of figures/tables/illustrations	1
High-res required	no
Will you be translating?	no
Circulation/distribution	10,001 to 20,000
Author of this Springer Nature content	no
Title	Data Carpentry Project Organization and Management for Genomics
Client / Sponsor	The Carentries
Expected presentation date	Mar 2019
Portions	We request to use in our training materials a screen capture of the portion of the methods section that shows the BioProject number associated with the data for this manuscript. This is to instruct on how to read a scientific manuscript.
Requestor Location	The Carpentries1000 Broadway Suite #480OAKLAND, CA 94607United StatesAttn: The Carpentries
Billing Type	Invoice
Billing address	The Carpentries1000 Broadway Suite #480OAKLAND, CA 94607United StatesAttn: The Carpentries
Total	0.00 USD

Please see these terms and conditions:

The Licensor's permission must be acknowledged next to the licensed material in print. In electronic form, this acknowledgement must be visible at the same time as the figures/tables/illustrations or abstract, and must be hyperlinked to the journal/book's homepage. Our required acknowledgement format is in the Appendix below.

For Journal Content: Reprinted by permission from [the Licensor]: [Journal Publisher (e.g. Nature/Springer/Palgrave)] [JOURNAL NAME] [REFERENCE CITATION (Article name, Author(s) Name), [COPYRIGHT] (year of publication)

[hoytpr]

Awesome @ErinBecker. Thanks, @taylorreiter are you going to put in a PR?

[taylorreiter]

PR in at #98!

[hoytpr]

I believe we now agree there should be images. Closing #82