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datacarpentry / shell-genomics

Introduction to the Command Line for Genomics
https://datacarpentry.org/shell-genomics
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mybinder.org version of this lesson #137

Open ctb opened 6 years ago

ctb commented 6 years ago

Please see https://github.com/ngs-docs/ggg-shell-genomics-ws - I got this lesson working in binder just fine!

Click launch binder, then go to New... Terminal... and follow through lesson! This could be a good option for people who are having trouble getting the AWS thing going.

Also note that the data set for this set of lessons specifically is only the stuff under dc_sample_data/ which is in the ~100kb range. The comment about file sizes at the top of http://www.datacarpentry.org/genomics-workshop/setup/ is super scary :)

aschuerch commented 6 years ago

Thank you @ctb ! I'll would also see this as an option for people working through the lesson by themselves. We could add this in the Technical Tips&Tricks section of the instructor notes

I agree with your concern about the file size comment in the setup. It is the setup of tools that currently necessitates the AWS machines, and not so much the file size.

ctb commented 6 years ago

Video recording here: https://www.youtube.com/watch?v=5lJaRtFwRzc - haven't reviewed it but it should be SFW :)

JasonJWilliamsNY commented 5 years ago

Arizona BugBBQ - Any technology implementations should be referred to the technology/data maintainers

p-j-smith commented 9 months ago

Thanks for sharing this @ctb! I just launched the lessons and it still builds okay. I think @aschuerch's suggestion to add this to the instructor notes makes sense