Potentially outdated / deprecated docs to look into post infra migration

[DragosIorgulescu]

• documentation/reports.md -- specifically this section: https://github.com/CDL-Dryad/dryad-app/blob/73601a7ba0d7d6748c17ef84012268f5619009f5/documentation/reports.md?plain=1#L38-L49
• cron/README.md
  • counter processor moving to a new server: https://github.com/CDL-Dryad/dryad-app/blob/eb5c1ffa2177ebbfa2230aa3537a11e88e44ecb8/cron/README.md?plain=1#L38-L52
  • copying old finished reports: https://github.com/CDL-Dryad/dryad-app/blob/eb5c1ffa2177ebbfa2230aa3537a11e88e44ecb8/cron/README.md?plain=1#L54-L58
• log_combiner.rb -- specifically the remove_old_logs_remote method seems to be referencing log paths: https://github.com/CDL-Dryad/dryad-app/blob/e9829a990867a3d5bf98885f084971ba598bbfc3/lib/tasks/counter/log_combiner.rb#L63-L76
  • main question here is if this is still being used, and if yes, what for?
• documentation/tenants.md -- the authentication strategy section: https://github.com/CDL-Dryad/dryad-app/blob/73601a7ba0d7d6748c17ef84012268f5619009f5/documentation/tenants.md?plain=1#L73-L88
  • referencing some paths that are no longer valid/current?
• config/deploy.rb.pre_puppet -- this file could probably be removed completely: https://github.com/CDL-Dryad/dryad-app/blob/f533273b39ca0119464814777934dbebb1e771d3/config/deploy.rb.pre_puppet
• documentation/ruby_version_server_upgrade.md -- this file could be removed completely: https://github.com/CDL-Dryad/dryad-app/blob/45d252d1589c851482c09b51f2411d12c512d21e/documentation/ruby_version_server_upgrade.md
• documentation/server_maintenance/storage.md -- specifically the hold_submissions.txt section: https://github.com/CDL-Dryad/dryad-app/blob/3f048732b3bad89990e684f9c25912525c8deee5/documentation/server_maintenance/storage.md?plain=1#L19-L40
• lib/tasks/embargo_fix.rake -- is this something we use? https://github.com/CDL-Dryad/dryad-app/blob/daae30efe32823641fdfc57f471ba794aecab9a5/lib/tasks/embargo_fix.rake
• stash/script/mdc-to-log/README.md -- not sure what this is for: https://github.com/CDL-Dryad/dryad-app/blob/698b9e35dfd5b9c6c6036a2e25349776bc5b487c/stash/script/mdc-to-log/README.md
• config/scripts/delayed_job.sh and long_jobs.sh -- these may no longe be used, need to check
  • https://github.com/CDL-Dryad/dryad-app/blob/aecf506ec39d5eff0436adce286aeb3f9899c423/config/script/long_jobs.sh
  • https://github.com/CDL-Dryad/dryad-app/blob/aecf506ec39d5eff0436adce286aeb3f9899c423/config/script/delayed_job.sh

[ahamelers]

It appears that documentation pages are badly out of date. They need to be updated.

Some relevant pull requests that have changed the behavior recently:

• https://github.com/CDL-Dryad/dryad-app/pull/1167
• https://github.com/CDL-Dryad/dryad-app/pull/1361
• https://github.com/CDL-Dryad/dryad-app/pull/1418
• https://github.com/CDL-Dryad/dryad-app/pull/1488

Originally posted by @ryscher in https://github.com/CDL-Dryad/dryad-product-roadmap/issues/3135#issuecomment-2032140829

[ahamelers]

Duplicate of #2914 but we'll close that one 😄