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datajoint
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element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
https://datajoint.com/docs
MIT License
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Improve plotting in tutorial and minor updates to standardize with other Elements
#196
MilagrosMarin
closed
2 months ago
0
fix: skip ingesting for rigid motion correction - suite2p no longer output the shifts
#195
ttngu207
closed
4 months ago
0
fix: robust handling of paths between steps (tables)
#194
ttngu207
closed
4 months ago
0
fix: bugfix getting abs path
#193
ttngu207
closed
4 months ago
0
Add ROI drawing widget
#192
kushalbakshi
closed
4 months ago
0
fix(field_processing): fix key_source to multi-field only
#191
ttngu207
closed
5 months ago
0
Minor fix: infer/make output dir and improve key_source
#190
ttngu207
closed
5 months ago
0
Add ROI drawing widget for manual curation
#189
kushalbakshi
closed
5 months ago
1
Add pytest
#188
ttngu207
closed
5 months ago
0
Image processing / segmentation on a per-field basis
#187
ttngu207
closed
5 months ago
0
Image processing / segmentation on a per-field basis
#186
ttngu207
closed
5 months ago
0
make output_dir if not exist for task_mode="trigger" & update ScanInfo for mesocans
#185
ttngu207
closed
7 months ago
0
Update element-interface to `staging` branch
#184
kushalbakshi
closed
7 months ago
0
Caiman per plane processing
#183
ttngu207
closed
7 months ago
0
Fix merge conflict
#182
ttngu207
closed
7 months ago
0
pull from main
#181
ttngu207
closed
7 months ago
0
Fix - Remove `plane_idx` from `write_single_bigtiff()`
#180
kushalbakshi
closed
7 months ago
0
Adding New Acquisition Software, ThorImage
#179
Paschas
opened
7 months ago
0
feat(imaging): write bigtiff for caiman processing for bruker files
#178
ttngu207
closed
7 months ago
0
Updates to package requirements + formatting with `black`
#177
kushalbakshi
closed
7 months ago
0
Minor fixes to notebooks
#176
kushalbakshi
closed
8 months ago
0
Update tutorial notebook and minor fixes
#175
kushalbakshi
closed
8 months ago
0
Add multi-plane processing using CaImAn
#174
kushalbakshi
closed
9 months ago
0
revert: :memo: revert docs dark mode cell text color
#173
A-Baji
closed
9 months ago
0
Revert old `slice` commit
#172
kushalbakshi
closed
11 months ago
0
Formatting + Fix typo indicies -> indices
#171
kushalbakshi
closed
11 months ago
0
Add motion correction indicies to caiman params
#170
kushalbakshi
closed
11 months ago
1
Fix docs - Missing left navigation sidebar
#169
kabilar
closed
12 months ago
0
Update `mkdocs.yaml` and typo in `setup.py`
#168
MilagrosMarin
closed
1 year ago
0
Hard fix 'force_sktiff' suite2p parameter
#167
sidhulyalkar
closed
1 year ago
0
Fix `PrairieViewMeta` import statements
#166
kushalbakshi
closed
1 year ago
0
bugfix in infer_output_dir
#165
ttngu207
closed
1 year ago
0
bugfix in `infer_output_dir`
#164
ttngu207
closed
7 months ago
0
pull from upsteam main
#163
ttngu207
closed
1 year ago
0
pull from `main`
#162
ttngu207
closed
1 year ago
0
Per plane processing
#161
ttngu207
closed
1 year ago
0
Bugfix: rename get_image_files to get_calcium_imaging_files
#160
sidhulyalkar
closed
1 year ago
4
Add z drift metrics to `imaging.py`
#159
kushalbakshi
opened
1 year ago
0
Update `get_calcium_imaging_files` and installation instructions
#158
kabilar
closed
1 year ago
0
Update version for release
#157
kabilar
closed
1 year ago
0
Export from DataJoint Element to NWB
#156
kushalbakshi
closed
10 months ago
0
Update import statement for prairie_view_loader
#155
kushalbakshi
closed
1 year ago
1
Update GitHub Actions, Dev Container, and dependencies
#154
kabilar
closed
1 year ago
0
Add license scan report and status
#153
fossabot
closed
1 year ago
1
Update README and Dev Container
#152
kabilar
closed
1 year ago
1
Patch issue with nullable attributes
#151
kabilar
closed
1 year ago
1
Update requirements
#150
kabilar
closed
1 year ago
0
Update Codespace configuration
#149
kabilar
closed
1 year ago
0
Remove requirements
#148
kabilar
closed
1 year ago
1
Remove host requirements
#147
kabilar
closed
1 year ago
1
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