Update pipeline declaration, ingestion script, and notebooks

datajoint / workflow-miniscope

Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn

https://datajoint.com/docs

MIT License

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Closed kabilar closed 2 years ago

kabilar commented 2 years ago

Update Docker and Compose files
Update diagram
Remove previous notebooks
Add new notebooks with Jupytext paired python scripts
Update automated ingest script
Add table definition to pipeline script
Also see: https://github.com/datajoint/element-miniscope/pull/13
In a future pull request, I will add the following:
- 04-automate and 05-explore Jupyter notebooks
- pytests

kabilar commented 2 years ago

Hi @tdincer, this pull request is ready for review. Let's try to merge by Friday, April 29. Thanks!