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datalad / datalad-neuroimaging

DataLad extension for neuroimaging research
http://datalad.org
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test_bids2scidata AssertionError #82

Closed yarikoptic closed 4 years ago

yarikoptic commented 4 years ago

daily run https://github.com/datalad/datalad-extensions/runs/603788377

. (dataset): datalad_core,datalad_unique_content_properties,dicom
======================================================================
. (dataset): datalad_core,datalad_unique_content_properties,dicom
FAIL: datalad_neuroimaging.tests.test_bids2scidata.test_real_ds
. (dataset): datalad_core,datalad_unique_content_properties,nidm
----------------------------------------------------------------------
nifti1.nii.gz (file): annex,nifti1
Traceback (most recent call last):
. (dataset): bids,datalad_core,datalad_unique_content_properties
  File "/opt/hostedtoolcache/Python/3.7.6/x64/lib/python3.7/site-packages/nose/case.py", line 198, in runTest
. (dataset): bids,datalad_core,datalad_unique_content_properties
    self.test(*self.arg)
. (dataset): aggregated
  File "/opt/hostedtoolcache/Python/3.7.6/x64/lib/python3.7/site-packages/datalad/tests/utils.py", line 691, in newfunc
acq100 (dataset): aggregated
    return t(*(arg + (filename,)), **kw)
. (dataset): bids,datalad_core,datalad_unique_content_properties,nifti1
  File "/opt/hostedtoolcache/Python/3.7.6/x64/lib/python3.7/site-packages/datalad/tests/utils.py", line 691, in newfunc
    return t(*(arg + (filename,)), **kw)
  File "/opt/hostedtoolcache/Python/3.7.6/x64/lib/python3.7/site-packages/datalad_neuroimaging/tests/test_bids2scidata.py", line 172, in test_real_ds
    ['a_mri_bold.txt', 'a_mri_t1w.txt', 'i_Investigation.txt', 's_study.txt'])
AssertionError: ['a_mri_t1w.txt', 'i_Investigation.txt', 's_study.txt'] != ['a_mri_bold.txt', 'a_mri_t1w.txt', 'i_Investigation.txt', 's_study.txt']
yarikoptic commented 4 years ago

nope, not flaky -- started to appear consistently on Apr 16. Our last change is on Feb 26 so must be something in dependencies

yarikoptic commented 4 years ago

underlying issues is in dcm2niix, filed: https://github.com/rordenlab/dcm2niix/issues/395

yarikoptic commented 4 years ago

ok, just uploaded dcm2niix 1.0.20200427 to neurodebian. it should resolve this test failure