mih
commented
5 years ago This looks very good!
Open yarikoptic opened 6 years ago
mih
commented
5 years ago This looks very good!
soichih
commented
3 years ago Does identifiers.org provide services like datacite/doi - but limited to the bioinformatics?
yarikoptic
commented
3 years ago AFAIK it doesn't provide dois. Not sure if provides citations (didn't check). We use it for dandi archive so not limited to a field AFAIK
adswa
commented
3 years ago There seems to be consensus to do it, right?
Can we brainstorm together what to put in the fields?
Namespace Name:
The name of the new ID space. Example: Protein Data Bank.
datalad
Description
Short description of the ID space in one or multiple sentences. Example: The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
DataLad is a Python-based tool for the joint management of code, data, and their relationship, built on top of a versatile system for data logistics (git-annex) and the distributed version control system (Git).
Requested Prefix
Character string meant to precede the colon in resolved identifiers. No spaces or punctuation, only lowercase alphanumerical characters, underscores and dots. Example: pdb.
datalad
Sample Id
An example local identifier. Example: 2gc4.
TODO
Regex pattern
A regular expression definition of the IDs in this namespace. Example: ^[0-9][A-Za-z0-9]{3}$.
TODO
Supporting references (Optional)
Supporting references (URLs, citations), if any, to published work describing the resource. Enter one per line. Example: https://doi.org/10.1093/nar/28.1.235.
https://doi.org/10.21105/joss.03262
Additional information (Optional)
Anything else you wish to tell or ask us.
TODO
Which institution should we put there? It looks like it accepts only one. FZJ would be https://ror.org/02nv7yv05, Dartmouth college would be https://ror.org/049s0rh22
This could be copied over from the institution we input, or we need to create descriptions ourselves for, e.g., datalad as an organization.
Name
The name of the provider. Example: ChEBI (Chemical Entities of Biological Interest).
Description
Short description of the provider in one or multiple sentences. Example: ChEBI (Chemical Entities of Biological Interest) at EMBL-EBI.
Home URL
URL for a home page that describes the role of the provider in the current namespace. Example: http://www.pdbe.org/.
Provider code
This is a unique identifier for the provider within the namespace, for forced resolution requests. No spaces or punctuation, only lowercase alphanumerical characters, underscores and dots. Example: pdb.
URL Pattern
A URL-like string specifying a rule for resolving this identifier. The rule should contain the key "{$id}", which acts as a placeholder for the resolution services. Example: http://www.ebi.ac.uk/pdbe/entry/pdb/{$id}.
Location
The location from which the provider is offering its services (main location in case of multiple ones).
Fullname
yarikoptic
commented
2 years ago I will transfer to registry since most likely it would be something like datalad:uuid and we would need to resolve correspondingly etc.
yarikoptic
commented
8 months ago I have initiated registration for registry, but then realized that it better gets associated with CON. Submitted application -- Now we got ROR for CON: https://ror.org/04tfhh831 , the github issue was
What is the problem?
We should register our prefix (
datalad:) which would disambiguate the DataLad UUID(is it possible? or only by path?) to the location(s?) of the dataset.I wondered even if that should be used as "the registry" (#947) we proposed to work on: they already seems to provide many needed pieces, but not sure if it would be "open" for "anonymous" submission of the entries/pointers. in our case registry should be the one "checking" the target urls and fetching/aggregating
TODOs: