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OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
https://orthoevolution.readthedocs.io/en/master/
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Improved sge module and updated Blast module
#120
Closed
sdhutchins
closed
6 years ago
sdhutchins
commented
6 years ago
Features Added:
Added a function that will parse output of qstat.
Added ftp path to windowmasker files.
Added and tested function for downloading windowmaskerfiles
Added a timeout to the ftp login
Added long awaited wait function to SGEJob
Added _archive function for ncbiftpclient class to help when updating
Added standalone ncbi-download.py script that has argparse incorporated
Notable Changes:
Changed
CompGenBLASTn
to
OrthoBlastN
since it's designed for orthology inference
Changed name of organisms and taxonomy ids file
Updated template pbs file
Added templates folder to Manager/config path
Remodeled qstat. Parses job information. Returns jobs ids and status.
New Issues
Ceratotherium simum simum
's taxonomy id was changed to
310713
and
Odobenus rosmarus divergens
's is still
9708
.
Features Added:
Notable Changes:
CompGenBLASTn
toOrthoBlastN
since it's designed for orthology inferenceNew Issues
310713
and Odobenus rosmarus divergens's is still9708
.