Closed grabear closed 4 years ago
OMG, 550 commits lol
I have done my best @sdhutchins!
I have done my best @sdhutchins!
I just had to tease you! lol There's a lot here...
@grabear something is suddenly broken with the blast stuff? Any ideas?
Something changed with the taxonomy on NCBI's end that's causing the blast test to fail.
It might be ete3 as well. That's always weird. I'm going to check this out after lunch. Can't do much right now.
It might be ete3 as well. That's always weird. I'm going to check this out after lunch. Can't do much right now.
No worries! Seems like something small.
It might be ete3 as well. That's always weird. I'm going to check this out after lunch. Can't do much right now.
Seems someone else had the same issue as well. https://github.com/etetoolkit/ete/issues/469
I'll try a work around that just "kills" the blast to make the test pass.
@grabear im going to add back code coverage this afternoon, and I think I we'll be good to go since that text failure isn't based on us.
Once you review #167, we can go on and merge this!
I'm so happyyyyy! haha
:exclamation: No coverage uploaded for pull request base (
master@64593b1
). Click here to learn what that means. The diff coverage isn/a
.
@@ Coverage Diff @@
## master #155 +/- ##
=========================================
Coverage ? 15.13%
=========================================
Files ? 67
Lines ? 4182
Branches ? 0
=========================================
Hits ? 633
Misses ? 3549
Partials ? 0
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Fixes issues #134, #95
BaseBlastN
andOrthoBlastN
classes.BaseQsub
andQsub
classes.Qwatch
.FullUtilities
class.BaseDatabaseManagement
andDatabaseManagement
classes.NcbiblastnCommandline
class which is compatible with version 5 blast databases.nose
topytest
while still using unittests.sge
,mpi
, andstreamieo
modulesqstat.py
topbs
module..coveragerc
for eventual code coverage setup.readthedocs.yml
for documentation.