Closed aegururaj closed 5 years ago
@aegururaj I imagine you are referring that the different types of relatedEntities are missing from the visualisation of the schema as per this link:
This is not a problem of the schema but of the tool to visualise it. We will look into it.
How do we represent the identifiers for the relatedEntities, taxonomic information etc? Previous mapping had the following: 1) _source'.'orthology'[].'confidence' - Dataset.isAbout.MolecularEntity.relatedEntities.characteristics.Dimension.values 2) _source'.'orthology'[].'gene1AgrPrimaryId' -Dataset.isAbout.MolecularEntity.relatedEntities.Identifiers.identifier 3) _source'.'orthology'[].'gene1Species' - Dataset.isAbout.MolecularEntity.relatedEntities.taxonomy.TaxonomicInformation.identifier 4) _source'.'orthology'[].'gene1SpeciesName' - Dataset.isAbout.MolecularEntity.relatedEntities.taxonomy.TaxonomicInformation.name 5) _source'.'orthology'[*].'gene1Symbol' - Dataset.isAbout.MolecularEntity.relatedEntities.AlternateIdentifiers.identifier
What before was a specific 'MolecularEntity' now it can be any 'object' (that itself can be a 'MolecularEntity').
e.g. _source'.'orthology'[*].'confidence' - Dataset.isAbout.MolecularEntity.relatedEntities.object.characteristics.Dimension.values
where now the 'object' property points to a MolecularEntity with specific characteristics .
I assumed so but wanted to confirm. Thanks for the clarification, Alejandra ☺
From: Alejandra Gonzalez-Beltran notifications@github.com Reply-To: datatagsuite/schema reply@reply.github.com Date: Wednesday, September 19, 2018 at 9:32 AM To: datatagsuite/schema schema@noreply.github.com Cc: "Gururaj, Anupama" Anupama.E.Gururaj@uth.tmc.edu, Mention mention@noreply.github.com Subject: Re: [datatagsuite/schema] The schema for relatedEntities is missing (#27)
What before was a specific 'MolecularEntity' now it can be any 'object' (that itself can be a 'MolecularEntity'.
e.g. _source'.'orthology'[*].'confidence' - Dataset.isAbout.MolecularEntity.relatedEntities.object.characteristics.Dimension.values
where now the 'object' property points to a MolecularEntity with specific characteristics .
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_datatagsuite_schema_issues_27-23issuecomment-2D422804876&d=DwMFaQ&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=d5w4WGsMSBN5okxuESTpnEMKGxfgm8DFlqtMmXNdF8c&m=YpAjjKlxtRMRxTVZiXmr38Dbe-VqADfPW84iCV9y-nc&s=e1nchy82aGp_JmfKT6G_zbjR_o2vO-pOQlJIn3uF6nQ&e=, or mute the threadhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_ALO1Fo9tmXGcgf9-5F0zdzaauY60VHrkgCks5uckd5gaJpZM4WvQWl&d=DwMFaQ&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=d5w4WGsMSBN5okxuESTpnEMKGxfgm8DFlqtMmXNdF8c&m=YpAjjKlxtRMRxTVZiXmr38Dbe-VqADfPW84iCV9y-nc&s=qLUCxrWXD5HezMy6l4pT2Aq-S9PzBeEEyNm9roWto2c&e=.
I created the visualization issue in the json-schema documenter repo: https://github.com/FAIRsharing/JSONSchema-documenter/issues/34
This would possibly be the molecular entity schema?