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dattalab / keypoint-moseq

https://keypoint-moseq.readthedocs.io
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Updating to keypoint_moseq 2.0 #80

Closed ellaksay closed 11 months ago

ellaksay commented 11 months ago

Hello! I am updated to keypoint_moseq 2.0 by using pip install -U keypoint_moseq with the conda environment activated in the terminal and relaunching the jupyter lab. However, when I check using kpms.version it says it's still running on keypoint_moseq version 1.5. Could this be due to jupyter lab and kpms being managed by different things? If so, what would be the best fix such that updating kpms would translate to the jupyter lab notebook. I have also tried running !pip install -U keypoint_moseq directly in jupyter lab and still no change. Thank you!

calebweinreb commented 11 months ago

In jupyter lab what kernel is being used? It should say in the top right.

ellaksay commented 11 months ago

keypoint_moseq is the kernel. Currently I am getting the output ModuleNotFoundError: No module named 'ipython_genutils' Is it possible that a full version of anaconda is needed to install? I am going to try to restart installation from scratch on a different account that's equipped with miniconda.

calebweinreb commented 11 months ago

Hi Ella, This looks like a bug on our end. I'll fix it ASAP and let you know next steps.

calebweinreb commented 11 months ago

OK well for now you can just pip install ipython_genutils and that should work. We'll also release a new version with that dependency added