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dattalab / keypoint-moseq

https://keypoint-moseq.readthedocs.io
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installing jupyter nbextensions #94

Closed ligeralde closed 8 months ago

ligeralde commented 10 months ago

Using mamba on Apple M2 Max hardware, i did the following steps as per the keypoint-moseq docs:

git clone https://github.com/dattalab/keypoint-moseq
cd keypoint-moseq 
conda env create -f conda_envs/environment.mac_cpu.yml
conda activate keypoint_moseq
python -m ipykernel install --user --name=keypoint_moseq

But then, when i run jupyter nbextension install --py jupyter_nbextensions_configurator --sys-prefix

I get the following error:

Jupyter: Interactive Computing

positional arguments:
  subcommand     the subcommand to launch

optional arguments:
usage: jupyter [-h] [--version] [--config-dir] [--data-dir] [--runtime-dir] [--paths] [--json] [--debug] [subcommand]

Jupyter: Interactive Computing

positional arguments:
  subcommand     the subcommand to launch

optional arguments:
  -h, --help     show this help message and exit
  --version      show the versions of core jupyter packages and exit
  --config-dir   show Jupyter config dir
  --data-dir     show Jupyter data dir
  --runtime-dir  show Jupyter runtime dir
  --paths        show all Jupyter paths. Add --json for machine-readable format.
  --json         output paths as machine-readable json
  --debug        output debug information about paths

Available subcommands: console dejavu events execute kernel kernelspec lab labextension labhub migrate nbconvert notebook run server troubleshoot trust

Jupyter command `jupyter-nbextension` not found.

is it under labextension instead?

calebweinreb commented 10 months ago

Sorry for the late response to this. Did you end up finding a solution? I don't have much experience using mamba so I'm not sure the best way forward. I will note, however, that the jupyter extensions are only needed for the analysis notebook (so you can still fit a keypoint-moseq model with the installation you already have) and were are planning to release a new version of the analysis notebook soon that doesn't need these extensions anyway.

calebweinreb commented 8 months ago

Closing since we no longer require jupyter extensions as of version 0.3.1