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dattalab / moseq2-app

MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.
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Crowd Movie Generation and Interactive Syllable Labelling Tool in MoSeq2-Analysis-Visualization-Notebook.ipynb not working #244

Open chongshaohong opened 1 year ago

chongshaohong commented 1 year ago

Expected Behavior

Notebook block should generate an interactive syllable labeling tool.

Current Behavior

Error appears, see attached PDF

Possible Solution

Steps to Reproduce (for bugs)

  1. Use WSL2 Ubuntu terminal
  2. Install Anaconda from (https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-x86_64.sh)
  3. Create and activate moseq2-app Anaconda environment using instructions on (https://github.com/dattalab/moseq2-app/wiki/Install-MoSeq2-on-Windows-using-Conda)
  4. Download and extract test dataset "Extraction + Model Results Only"
  5. Open jupyter notebook
  6. Open MoSeq2-Analysis-Visualization-Notebook.ipynb
  7. Modify progress.ymal by changing base_dir to correct directory as stated by output from "Load Progress" block
  8. Modify progress.ymal by adding line "base_model_path: ./saline-amphetamine/" so that the step "Setup Directory Structure for Analyzing Model(s)" can run
  9. Run all cells until "Crowd Movie Generation and Interactive Syllable Labelling Tool"

Screenshots

Output from block:

MoSeq2-Analysis-Visualization-Notebook.pdf

I also tried to delete anaconda and install miniconda using the instructions on (https://github.com/dattalab/moseq2-app/wiki/Install-MoSeq2-on-Windows-using-Conda) but obtained the same results:

MoSeq2-Analysis-Visualization-Notebook 02.zip

Context

Your Environment

versey-sherry commented 1 year ago

It looks like the environment is not correctly installed. Could you try to reinstall the environment?

chongshaohong commented 1 year ago

I tried to solve the problem by reinstalling the environment, but the problem persisted. I then uninstalled and reinstalled Ubuntu, which didn't solve the problem. I then tried installing the environment on a separate computer running Windows 10, but got the same error.