I am trying to design new sequence of protein-DNA complex that folded by RFNA model. Yet I met following error:
Traceback (most recent call last):
File "/workspace/work/LigandMPNN/run.py", line 991, in <module>
main(args)
File "/workspace/work/LigandMPNN/run.py", line 396, in main
feature_dict = featurize(
File "/workspace/work/LigandMPNN/data_utils.py", line 946, in featurize
Y, Y_t, Y_m, D_XY = get_nearest_neighbours(
File "/workspace/work/LigandMPNN/data_utils.py", line 898, in get_nearest_neighbours
D_AB_closest = torch.sqrt(L2_AB_nn[:, 0])
IndexError: index 0 is out of bounds for dimension 1 with size 0
Hi @dauparas ,
Thanks for the work!
I am trying to design new sequence of protein-DNA complex that folded by RFNA model. Yet I met following error:
The command I called is:
example.pdb file can be found in this link (https://drive.google.com/file/d/16rRDi5sVqTONDIU5h7hpqBBWco6hb_uf/view?usp=sharing).
Can you please help me out?
Thanks a lot!