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dauparas / ProteinMPNN

Code for the ProteinMPNN paper
MIT License
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Clarification about score and global_score? #35

Closed ayaanhossain closed 1 year ago

ayaanhossain commented 1 year ago

Hello! Can you specify exactly what score and global score means in the context of the original PDB sequence and the designed sequence? I understand the recovery as the probability of sequence identity to the original PDB string. Thanks!

ayaanhossain commented 1 year ago

Figured it out! The np.exp(-score) gives the probability of the sequence folding into the structure.