dauparas / ProteinMPNN

Code for the ProteinMPNN paper
MIT License
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How to prepare input files for fine-tuning with multimers? #60

Open gezmi opened 1 year ago

gezmi commented 1 year ago

Hi,

I would like to fine-tune on certain complexes, always knowing which chain I want to be masked. How should I input this?

How do the list.csv, test_cluster and valid_cluster change for multimers if at all? I could not find anything about this in the training directory. What doees that mean?

Thank you!

anar-rzayev commented 1 day ago

@gezmi Let me know if you've figured it out