david-barnett / microViz

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
https://david-barnett.github.io/microViz/
GNU General Public License v3.0
106 stars 11 forks source link

taxatree_models trans arg #122

Closed david-barnett closed 1 year ago

david-barnett commented 1 year ago

fixing incorrect taxatree_models examples by allowing post-aggregation transformations

codecov-commenter commented 1 year ago

Codecov Report

Merging #122 (7e076ef) into main (9e12f8b) will decrease coverage by 0.06%. Report is 1 commits behind head on main. The diff coverage is 78.57%.

:exclamation: Your organization is not using the GitHub App Integration. As a result you may experience degraded service beginning May 15th. Please install the Github App Integration for your organization. Read more.

@@            Coverage Diff             @@
##             main     #122      +/-   ##
==========================================
- Coverage   75.31%   75.26%   -0.06%     
==========================================
  Files          68       68              
  Lines        4679     4697      +18     
==========================================
+ Hits         3524     3535      +11     
- Misses       1155     1162       +7     
Files Changed Coverage Δ
R/taxatree_models2stats.R 63.88% <ø> (ø)
R/tax_model.R 69.28% <55.55%> (-0.64%) :arrow_down:
R/taxatree_stats_p_adjust.R 84.61% <84.61%> (+84.61%) :arrow_up:
R/tax_agg.R 96.15% <100.00%> (+0.07%) :arrow_up:
R/tax_transform.R 83.33% <100.00%> (ø)
R/taxatree_models.R 76.47% <100.00%> (+0.71%) :arrow_up:

... and 1 file with indirect coverage changes